Merging XCorr matches:
/home/satsuma2/bin//MergeXCorrMatches -i chrY/xcorr_aligns.final.out -q ./GCF_000181335.3_Felis_catus_9.0_genomic.fna_10k.fa -t ../Y.fasta -o chrY/satsuma_summary.chained.out > chrY/MergeXCorrMatches.chained.out
**Shutting down all slavesJoining Workqueue thread**
The job just spins at this step (was stuck all night)
The output from the final SL9 log file lists:
worker created, now to work!!!
== Processing finished, waiting for the slaves to die ==
TIME SPENT WORKING: 0
Any advice? I've tried adjusting the number of threads and how memory is allocated by SLURM. I keep on running into this issue. The test data set runs just fine.
Hello, I'm attempting to identify and remove any sex scaffolds from a reference genome by running the following command through SLURM:
After modifying the "satsuma_run.sh" file to:
I'm running into issues running MergeXCorrMatches
The job just spins at this step (was stuck all night)
The output from the final SL9 log file lists:
Any advice? I've tried adjusting the number of threads and how memory is allocated by SLURM. I keep on running into this issue. The test data set runs just fine.
Thank you, -Andrew