Can a killed job be resumed?

[ValentinaBoP]

Hi!

Because of time limits, my SatsumaSynteny2 jobs were killed and I was wondering if it is possible to resume those jobs without starting again from scratch. I thought the options -old_seed or -seed may be useful for that but I'm a bit confused about how to use those options because the tool keeps complaining about the fact that the output folder is not empty.

For context, this is my output folder with the intermediate files (I don't think Satsuma managed to create them all)

-rw-rw-r-- 1 vpeona sllstore2017073     19080 Mar  9 10:22 kmatch_results.k11
-rw-rw-r-- 1 vpeona sllstore2017073   5361912 Mar  9 10:25 kmatch_results.k13
-rw-rw-r-- 1 vpeona sllstore2017073  52506360 Mar  9 10:28 kmatch_results.k15
-rw-rw-r-- 1 vpeona sllstore2017073 103034520 Mar  9 10:31 kmatch_results.k17
-rw-rw-r-- 1 vpeona sllstore2017073  32410368 Mar  9 10:34 kmatch_results.k19
-rw-rw-r-- 1 vpeona sllstore2017073  14720616 Mar  9 10:37 kmatch_results.k21
-rw-rw-r-- 1 vpeona sllstore2017073  11242440 Mar  9 10:40 kmatch_results.k23
-rw-rw-r-- 1 vpeona sllstore2017073   9649872 Mar  9 10:43 kmatch_results.k25
-rw-rw-r-- 1 vpeona sllstore2017073   8458704 Mar  9 10:46 kmatch_results.k27
-rw-rw-r-- 1 vpeona sllstore2017073   7482888 Mar  9 10:49 kmatch_results.k29
-rw-rw-r-- 1 vpeona sllstore2017073   6643296 Mar  9 10:52 kmatch_results.k31
-rw-rw-r-- 1 vpeona sllstore2017073         0 Mar  9 10:19 satsuma.log

Thanks for your help! Valentina

[jonwright99]

Hi Valentina, unfortunately Satsuma2 doesn't have this functionality, you'll have to start from scratch.