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bioinfologics / satsuma2

FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing
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Stuck at Kmer array filtered to 31 elements #57

Open gargkritika opened 2 years ago

gargkritika commented 2 years ago

Hi I am trying Satsuma2 to filter out scaffolds mapping to the sex chromosomes. My run is stuck at Kmer array filtered to 31 elements for a week now. Can you please suggest a solution for this error. The command I used was

./SatsumaSynteny2 -q /DATA1/balaji/3_repeat_masking/output.fasta.masked -t /DATA1/balaji/5_psmc/sex_chr_rm/sex_chromosome.txt -o /DATA1/balaji/6_satsuma/results -threads 16

Thank you Best regards Kritika