I cannot seem to get Satsuma to provide an output with a lower minimum probability. I need it to be at 75%, not 99.9%.
I am providing the following line:
SatsumaSynteny2 -q ./Anchored.scaffolds.only.fa -t ./GCF_002234675.1_ASM223467v1_genomic.fa -o GS_Satsuma2_WholeGenome_200match075prob -l 200 -min_prob 0.75
I have also tried with -min_prob 75 as the README seems to indicate it should be but I still receive the same output where everything is 1.0000
Good afternoon.
I cannot seem to get Satsuma to provide an output with a lower minimum probability. I need it to be at 75%, not 99.9%. I am providing the following line: SatsumaSynteny2 -q ./Anchored.scaffolds.only.fa -t ./GCF_002234675.1_ASM223467v1_genomic.fa -o GS_Satsuma2_WholeGenome_200match075prob -l 200 -min_prob 0.75
I have also tried with -min_prob 75 as the README seems to indicate it should be but I still receive the same output where everything is 1.0000
Please advise.