Closed madzafv closed 5 years ago
Hi,
Currently not, that was the plan for Satsuma 3; have you checked the usual suspects, lastz etc.? Do you need to do his truly reference independent?
Cheers,
On 2018-04-05 23:00, Madza Farias-Virgens wrote:
Hi! is it possible to run satsuma for more than 2 species at the same time? Lets say 3. If not would you advise on any other tool? Thanks!
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Hey! thanks for the quick reply! Yeah I was intending to build a whole-gen tree between the 3 species using SATe and I think I would need to filter for synteny using a common ref. Maybe I'm making things more complicated than they need to be? Obviously new to this...
Using usual suspects, like for example lastz, how is it possible to convert it to MizBee format?
I guess you would have to write a custom script to convert the output to MizBee format.
Hi! is it possible to run satsuma for more than 2 species at the same time? Lets say 3. If not would you advise on any other tool? Thanks!