Metagenomics_Analysis miniproject

[karegapauline]

Metagenomics_Analysis

[sebymusundi]

Hello, I am interested in taking part in the above analysis. It provides an opportunity to create various pipelines, get data and compare with the existing published works. It is also an opportunity to develop newer pipelines and check if the use of different tools would provide similar results. I believe i will significantly gain practical skills by being part of the above group.

[Faith-98]

Metagenomics is broad and presents many research opportunities. By taking part in this project, I will have the chance to explore the various tools that could be applied in metagenomics.

[karegapauline]

@Marthariv I am interested in gaining metagenomics data analysis skills . This metagenomic mini project present a great opportunity to achieve this

[wadegumeshack]

Metagenomics offers insightful approaches in research enabling scientists to determine myriad pathogens from a 'single pool' that could lead to -pathogen discovery, -determination of multiple infections arising from different pathogens within the same host -mapping of different pathogens to their respective vectors. The work accomplished in this publication in the preliminary molecular analyses and subsequent bioinformatics analyses is revolutionary in arbovirus research especially in regions not well resourced with regard to medical research funding. Coming from an acute respiratory viruses research background, I intend to apply the tools used in this study to determine instances of co-circulation of coronaviruses and other viral etiologies and the implication on disease severity.

[aakilkhanemon]

I have the expertise and research interest in bacterial and viral uncharacterized protein's molecular computational characterization, functional annotations, phylogenetic analysis, multiple sequence analysis, physicochemical analysis, sequence alignment, gene Identification, genome assembly, protein structure alignment, protein structure (2D and 3D) prediction, protein-protein interactions, genome-wide association studies, modelling of evolution. subcellular localization analysis, conserved domain analysis, motif, protein folding, coil, superfamily identification, model quality assessment, active site determination etc. Also gained projects experience with drug designing studies against human pathogenic infectious viruses and bacteria. Having hands-on experience with MEGA, Discovery Studio, PyMoL, Autodock tools(Vina, PyRx), Open Babel, Swissmodel, RaptorX, Galaxy, NCBI, UniProt, RSCB, LaTex, MS office, Mendeley, Endnote etc. I heartily believe that this mini-project will be so much helpful and will play a significant role in my molecular genomics, microbial data analysis research by using several bioinformatics knowledge and exploring projects about that particular field. Focus to obtain a research opportunity to utilize biosciences techniques, knowledge, computational biology tools to develop & implement bioinformatics applications & analysis programs and research prospects.

[florahnaks]

I am interested in taking part in this project as it will help me gain hands on experience on how to go about metagenomics research with the already acquired skills.

[cynthiaawuor3]

I am a MSc bioinformatics student and working in research laboratory doing a lot sequencing. Although i have no experience in metagenomics studies ,i am interested in being part of the training. Learning metagenomics analysis will broaden my research interests and i am ready to gain a lot of skills from this training that i will be so much glad to learn. I have experience analyzing RNASeq and viral genomes using linux/Unix and one of your objective being using tools and learning alternatives that can be used in the pipeline really excites me.I am really looking forward on taking the training and looking forward for your response.

[otenga-bit]

Viral vectors are notorious in disease transmission and understanding their genome and their characterization inspires me.

[jmajanja]

I am interested in taking part in this project because it is relevant to the work that I am currently doing. My PhD project is focused on pathogen discovery from mosquito samples. In my study, I am using viral culture followed by genome sequencing to detect uncharacterized viruses in mosquito pools. I have recently been trained on next generation sequence analysis using linux and this will add on to the repertoire of skills that are necessary for me to complete my PhD project successfully. I look forward to being part of this exciting opportunity.

[karegapauline]

Dear @sebymusundi , @wadegumeshack , @jmajanja , @florahnaks , @Faith-98 and @Marthariv, welcome to the Metagenomic Analysis mini project team. Kindly respond by sending an email to bioinformaticshubofkenya@gmail.com by Monday Nov 29 at 10:00am EAT confirming your acceptance to this invite. We look forward to hearing from you. 😃 . Congratulations.

[sebymusundi]

Hello,

Confirming my acceptance to the metagenomics analysis mini project team.

Regards. Musundi Sebastian

On Fri, Nov 26, 2021 at 4:37 PM karegapauline @.***> wrote:

Dear @sebymusundi https://github.com/sebymusundi , @wadegumeshack https://github.com/wadegumeshack , @jmajanja https://github.com/jmajanja , @florahnaks https://github.com/florahnaks , @Faith-98 https://github.com/Faith-98 and @Marthariv https://github.com/Marthariv, welcome to the Metagenomic Analysis mini project team. Kindly respond by sending an email to @.*** confirming your acceptance to this invite. We look forward to hearing from you. 😃 . Congratulations.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/bioinformatics-hub-ke/BOSS-miniprojects/issues/3#issuecomment-979984069, or unsubscribe https://github.com/notifications/unsubscribe-auth/AJOMB567TMGW75VNG4YOJP3UN6EQHANCNFSM5II66ZMA . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

[jmajanja]

Hi, This is my confirmation of acceptance to be part of the metagenomics analysis project team. Regards Janet Majanja

On Fri, Nov 26, 2021, 6:01 PM Musundi @.***> wrote:

Hello,

Confirming my acceptance to the metagenomics analysis mini project team.

Regards. Musundi Sebastian

On Fri, Nov 26, 2021 at 4:37 PM karegapauline @.***> wrote:

Dear @sebymusundi https://github.com/sebymusundi , @wadegumeshack https://github.com/wadegumeshack , @jmajanja https://github.com/jmajanja , @florahnaks https://github.com/florahnaks , @Faith-98 <https://github.com/Faith-98

and @Marthariv https://github.com/Marthariv, welcome to the Metagenomic Analysis mini project team. Kindly respond by sending an email to @.*** confirming your acceptance to this invite. We look forward to hearing from you. 😃 . Congratulations.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub < https://github.com/bioinformatics-hub-ke/BOSS-miniprojects/issues/3#issuecomment-979984069 , or unsubscribe < https://github.com/notifications/unsubscribe-auth/AJOMB567TMGW75VNG4YOJP3UN6EQHANCNFSM5II66ZMA

. Triage notifications on the go with GitHub Mobile for iOS < https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675

or Android < https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub .

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/bioinformatics-hub-ke/BOSS-miniprojects/issues/3#issuecomment-980042502, or unsubscribe https://github.com/notifications/unsubscribe-auth/AVL45F6WYV2SJWD7FPUZ6PTUN6OMTANCNFSM5II66ZMA . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

[florahnaks]

Thank you so much for the opportunity. I confirm my acceptance for participation.

Florence.

On Fri, Nov 26, 2021, 6:19 PM jmajanja @.***> wrote:

Hi, This is my confirmation of acceptance to be part of the metagenomics analysis project team. Regards Janet Majanja

On Fri, Nov 26, 2021, 6:01 PM Musundi @.***> wrote:

Hello,

Confirming my acceptance to the metagenomics analysis mini project team.

Regards. Musundi Sebastian

On Fri, Nov 26, 2021 at 4:37 PM karegapauline @.***> wrote:

Dear @sebymusundi https://github.com/sebymusundi , @wadegumeshack https://github.com/wadegumeshack , @jmajanja https://github.com/jmajanja , @florahnaks https://github.com/florahnaks , @Faith-98 < https://github.com/Faith-98

and @Marthariv https://github.com/Marthariv, welcome to the Metagenomic Analysis mini project team. Kindly respond by sending an email to @.*** confirming your acceptance to this invite. We look forward to hearing from you. 😃 . Congratulations.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <

https://github.com/bioinformatics-hub-ke/BOSS-miniprojects/issues/3#issuecomment-979984069

, or unsubscribe <

https://github.com/notifications/unsubscribe-auth/AJOMB567TMGW75VNG4YOJP3UN6EQHANCNFSM5II66ZMA

. Triage notifications on the go with GitHub Mobile for iOS <

https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675

or Android <

https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub

.

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[karegapauline]

@sebymusundi , @wadegumeshack , @jmajanja , @florahnaks , @Faith-98 and @Marthariv,

Dear participant,

Congratulations. You have been selected to participate in the 3rd Phase of BOSS events: Viral Mini project/Metagenomics/Open science/ Data Handbook/Plant genomics. We are inviting you for a virtual meeting on 1st December 2021 at 1600hrs to 1700hrs with the following agenda:

1. Introduction of Participants

2. Meeting up with your respective mentors

3. Time and Deadlines

4. Selecting mini project team leads

5. Discuss on the way forward

AoB

This is a mandatory meeting, so kindly join on time. Find the link to the zoom meeting below. We look forward to seeing you.

BHKI is inviting you to a scheduled Zoom meeting.

Topic: BOSS Mini Projects Introduction meeting Time: Dec 1, 2021 04:00 PM Nairobi

Join Zoom Meeting https://us02web.zoom.us/j/86411432009?pwd=d0h0dVhUSGZoL3VNM2dPYktnbXR2QT09

Meeting ID: 864 1143 2009 Passcode: 611959

Warm Regards,

David Kiragu On behalf of the BHKi and Open ScienceKE teams

[jmajanja]

Good morning, Unfortunately I missed the introductory meeting. Kindly advise.

regards, Janet