Open dougli1sqrd opened 5 years ago
Represent as ComplementOf https://github.com/geneontology/noctua/issues/524
If it helps, I have some example RDF for this captured in Noctua and documented here https://github.com/geneontology/gocamgen/issues/20#issuecomment-459474560
This change https://github.com/biolink/ontobio/commit/50e38f25e440ee61c3df4e6f9fbb2951609f3c04 provides the emit function for NOT
(aka complementOf
) in assoc_rdfgen.py
. Just need to hook it up to assoc_rdfgen
's CamRdfTransform.translate()
if we still wanted to handle these here: https://github.com/biolink/ontobio/blob/c66f2030530eaa4e9c5335d0bf7c6d24f094beb1/ontobio/rdfgen/assoc_rdfgen.py#L214
The RDF GO-CAM generation from association code in assoc_rdfgen does not handle NOT annotations. Currently there are GO Rules that refer to annotations being
NOT
annotations. But this is not represented when translated from associations.In order to more accurately represent the data, let's build a model based on
negated
field.