http://dx.doi.org/10.1371/journal.pone.0064832
PANDA (Passing Attributes between Networks for Data Assimilation) is a gene regulatory network inference method that uses message-passing to integrate multiple sources of 'omics data.
PANDA was first released in C++ but now we've created a python implementation of the PANDA algorithm that is both faster than the C++ version (because we now use matrix operations) and has more features.
peterjc
commented
8 years ago
http://dx.doi.org/10.1371/journal.pone.0064832 PANDA (Passing Attributes between Networks for Data Assimilation) is a gene regulatory network inference method that uses message-passing to integrate multiple sources of 'omics data.
PANDA was first released in C++ but now we've created a python implementation of the PANDA algorithm that is both faster than the C++ version (because we now use matrix operations) and has more features.
https://github.com/davidvi/pypanda
Would you be interested in adding pypanda to biopython? I would be willing to maintain the code.