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biosustain / km-stats

Statistical analysis of km reports from online databases
MIT License
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Parsing BRENDA content #2

Open Midnighter opened 4 years ago

Midnighter commented 4 years ago

Just wanted to give a quick heads up that I've been working on a full parser for BRENDA for a while but it's been lying around dormant. You can find it here

https://github.com/Midnighter/BRENDA-Parser

I made some headway in updating it but the syntax of the downloaded file is really mind-bending. If you guys have a need for it, though, it's a good incentive to come to a solution. And maybe you can pitch in?

teddygroves commented 4 years ago

Thanks! I'll have a read through. We've been having lots of trouble with the brenda website so anything that might help is very much appreciated!

Midnighter commented 4 years ago

Okay, let me also make sure that the latest work is pushed somewhere. What you see on master is super old.

teddygroves commented 4 years ago

I tried testing the current master against a fresh brenda txt file in python 3.7 and it seems to work fine after changing StandardError to Exception in a couple of places.