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blahah / transrate

Understand your transcriptome assembly
http://hibberdlab.com/transrate
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Unpaired #65

Closed MatthewRalston closed 8 years ago

MatthewRalston commented 10 years ago

Here, I've added an unpaired option and several tests for its use. I have not changed how the "good," "bad," or "pc_good" etc. metrics have been calculated, so currently these measures do not reflect this addition. I have made a few name rearrangements for the alignment stats to reflect the addition. The nomenclature is most apparent when you view the report in order.

bundle exec bin/transrate -a test/data/sorghum_transcript.fa -l test/data/150uncovered.l.fq -i test/data/150uncovered.r.fq -u test/data/150uncovered.u.fq

I hope you like the addition :) Let me know what I can do to make it more robust.

coveralls commented 10 years ago

Coverage Status

Coverage increased (+0.68%) when pulling 8610968d476393e4a9a17905bc06af2700ee6cde on MatthewRalston:unpaired into 031855aff72c1e4423c4d58e474e913c66cc518e on Blahah:master.

MatthewRalston commented 10 years ago

I've updated this branch with single read statistics and comma separated lists of unpaired reads. This branch is ready to merge on 8/14/14