Limit out of scope fhir edges

bmeg / iceberg-schema-tools

Create and maintain central iceberg schema.

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Limit out of scope fhir edges #26

Closed bwalsh closed 11 months ago

bwalsh commented 1 year ago

This PR:

limits scope of generated schema, particularly in graph schema: edges to vertex types that are 'out of scope' are not generated
jsonschema library update: schema references must be explicitly fetched

matthewpeterkort commented 1 year ago

Thank you.

New 125 schemas generated validate withe the golang json schema validator, and no longer reference other FHIR resources that do not currently exist in iceberg.

matthewpeterkort commented 1 year ago

All tests pass except flake8, tests/unit/test_coding_conventions.py fails and tests/integration/simplified/test_identifiers.py fails.

matthewpeterkort commented 11 months ago

OMOP Updated Schema with MedicationStatement/MedicationRequest added to rancher gen3 deployment