Open barlehmann opened 2 years ago
barlehmann
commented
2 years ago Hi @brainhackorg/project-monitors my project is ready!
Implement Cross Frequency Coupling Analysis in EEG as Consciousness Alteration Biomarker: Cutting-edge discrimination sensitivity of advanced meditation EEG patterns
Remi-Gau
commented
2 years ago Isn't this a duplicate of #112 ?
barlehmann
commented
2 years ago Remi, yes this is slightly adapted in terms of the contact information being updated for Brainhack DC, but I had submitted this earlier in another brainhack.
On Thu, Dec 9, 2021 at 1:14 PM Remi Gau @.***> wrote:
Isn't this a duplicate of #112 https://github.com/brainhackorg/global2021/issues/112 ?
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Title
EEG Cross Frequency Coupling, Consciousness Biomarker for Consciousness State Discrimination
Leaders
Bar Lehmann, MSW, LCSW, BCN, Owner at Better State of Mind Neurofeedback in Washington, DC.
Highly trained (by internationally renowned experts) experienced, board-certified Neurofeedback clinician and EEG researcher
Mattermost: brainhack @barlehmann
Collaborators
No response
Brainhack Global 2021 Event
Brainhack Washington DC
Project Description
Participate in one segment of an ongoing, cutting edge, citizen science, neuro-meditation research project. Help to implement pre-made functions described in study of cross-frequency coupling (CFC) analysis of EEG for discriminating subjective states by advanced meditators.
CFC is central to consciousness alterations in anesthesia, sleep, as well as psychedelics. Gradations of arousal, as well as various states of consciousness have been indexed by it.
Done in MNE python and/or Matlab. This implementation will lay the groundwork to develop this project to implement neurofeedback for neuro-meditation as next steps. Will also move towards evaluating small changes during a neurofeedback sessions. The code is (being implemented/re-created from directions from prior research article) for evaluating cross-frequency coupling of EEG data.
Contact Bar.lehmann at 301-768-0307 or bar.lehmann@gmail.com
Start familiarizing your self with basics of CFC and the implementation of it on Matlab as discussed in this lengthy pdf, you don't need to read the whole thing, but focus on the implementation of the two methods of CFC in.
The MNE Matlab Toolbox allows access of the Matlab functions through MNE: https://mne.tools/stable/overview/matlab.html#mne-matlab
Link to project repository/sources
https://github.com/barlehmann/EEG_State_Discrimination
Goals for Brainhack Global
Implement analysis of cross frequency coupling in either Matlab or Python for EEG datasets.
Good first issues
Issue 1, learn more about CFC and its relevance to meditation, as well as find documentation related to its implementation in matlab
The MNE Matlab Toolbox allows access of the Matlab functions through MNE: https://mne.tools/stable/overview/matlab.html#mne-matlab
Communication channels
Bar Lehmann by phone (301)-768-0307 Located in Washington, DC (Eastern Time Zone, USA).
Discord will be the communication channel: Server Name: CFC EEG Project Bar’s name on discord: bar #4734
Skills
Coders familiar with basics of EEG, python (especially MNE python) and/or MATLAB/EEGLab to implement the Cross Frequency Coupling analysis in the following study study
Advanced coding or neuroscience knowledge will be helpful but certainly not required since packages are all being implemented rather than created.
Coders who are interested in flexible opportunities to be involved with ongoing team of long term citizen science research exploring consciousness biomarkers and neurofeedback.
Any others interested in the project, help with coordination, outreach, or other aspects of the project are welcome
Onboarding documentation
https://www.researchgate.net/profile/Julio-Rodriguez-Larios/publication/351812052_ON_THE_RHYTHMS_OF_THOUGHT_EEG_alpha-theta_cross-frequency_dynamics_during_arithmetic_performance_mind_wandering_and_meditative_states/links/60ab63a045851522bc10de58/ON-THE-RHYTHMS-OF-THOUGHT-EEG-alpha-theta-cross-frequency-dynamics-during-arithmetic-performance-mind-wandering-and-meditative-states.pdf#page=83
What will participants learn?
Contributors will learn more about EEG, cross-frequency coupling and its centrality to consciousness changes in the, and also get experience with MNE Python and/or Matlab / EEGLAB
Coders who are interested in flexible opportunities to be involved with ongoing team of long term citizen science research exploring consciousness biomarkers and neurofeedback.
Data to use
Data is on the github repository. This work will use already-recorded and labeled 19-channel EEG datasets to evaluate metrics of entropy and cross frequency coupling of more “awake/aroused” states of consciousness vs. more tired less aroused states, and eventually evaluate meditative states.
Number of collaborators
more
Credit to collaborators
Have their names listed on the Github info document for the project. I will also be happy to provide written references for anyone who contributed.
Image
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Type
coding_methods, method_development, pipeline_development, other
Development status
0_concept_no_content
Topic
physiology, systems_neuroscience, other
Tools
Jupyter, MNE, other
Programming language
Matlab, Python
Modalities
EEG
Git skills
1_commit_push
Anything else?
No response
Things to do after the project is submitted and ready to review.
Hi @brainhackorg/project-monitors my project is ready!