Patch to correct issue trimming both sides of reads

brentp / bwa-mips

Map sequence from Molecular Inversion Probes with BWA, strip arms, de-dup, ..., profit

MIT License

10 stars 4 forks source link

Patch to correct issue trimming both sides of reads #3

Open Flope opened 8 years ago

Flope commented 8 years ago

The original codes was trimming both 5' and 3' end of the reads with the length of the arms. To correct that issue and keep the changes to minimum the proposed changes trim only 1bp from the 3' end for the FASTQ read.