brentp combined-pvalues issues

brentp / combined-pvalues

combining p-values using modified stouffer-liptak for spatially correlated results (probes)

MIT License

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issues

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Issues running pipeline.py - no output/output is blank document

#40 cewim closed 10 months ago
5
Installation issues

#39 annekristin opened 1 year ago
1
code pval upon float64

#38 fchuffar closed 2 years ago
1
Option confusion for region_p

#37 tomh1lll opened 2 years ago
3
updated setup.py

#36 cameronsevern closed 2 years ago
0
NameError after Fix #32 was pushed on September 3rd 2021

#35 annekristin closed 3 years ago
3
IndexError: list index out of range

#34 mathishil closed 3 years ago
1
issue with multiprocessing on MacOS with Python3.8

#33 ahryho opened 3 years ago
0
Manhattan Plot's chromosomes ordered as characters

#32 PhilBoileau closed 3 years ago
3
fix for #23

#31 lardenoije closed 4 years ago
0
Added option to specify gene table

#30 lardenoije closed 4 years ago
1
Checking my understanding of option -d

#29 qserenali opened 4 years ago
1
IndexError: list index out of range

#28 paujedynak closed 4 years ago
3
Python 3.7.7 - NameError: name 'basestring' is not defined

#27 ggzheng opened 4 years ago
0
ValueError: could not convert string to float: 'start'

#26 weizhousjtu opened 4 years ago
6
Errors related to threading when running under Python 2.7

#25 kkellysci closed 4 years ago
1
AttributeError: module '__main__' has no attribute '__spec__'

#24 paujedynak opened 4 years ago
4
Kept TIMEOUT_MAX error.

#23 zh9118 closed 4 years ago
4
raise Exception('need header in p-value file to run filter')

#22 Biojenifer closed 4 years ago
3
--anno option not usable (Module compatibility issue)

#21 Lei-Guo opened 4 years ago
5
ModuleNotFoundError: No module named '_common'

#20 Lei-Guo closed 4 years ago
6
regions-t.bed left empty

#19 hhx037 closed 4 years ago
9
runs in python3

#18 brentp closed 5 years ago
0
Python 3.7.3 issuing a TypeError for acf.py

#17 parcbioinfo opened 5 years ago
5
scipy.stats chisqprob fails to import

#16 jenzopr closed 6 years ago
6
combined-pvalues in bioconda

#15 jenzopr closed 7 years ago
1
better handling of regions using interlap

#14 brentp closed 9 years ago
0
https://continuum.io/downloads

#13 mmoisse closed 10 years ago
1
set p-values of 1 to 1-epsilon

#12 brentp closed 8 years ago
0
gracefully handle input files that don't have 't', 'start', and 'end' column in filter step.

#11 brentp closed 11 years ago
0
ACF based on -log10(p)

#10 brentp closed 12 years ago
0
More trouble with examples/charm/run.sh

#9 gotgenes closed 12 years ago
24
Missing files in examples/charm/data

#8 gotgenes closed 12 years ago
1
try different q-values

#7 brentp closed 12 years ago
1
create bigwig from bed

#6 brentp closed 12 years ago
1
qq-plot

#5 brentp closed 12 years ago
1
local ACF

#4 brentp closed 8 years ago
1
add manhattan-plot script

#3 brentp closed 12 years ago
2
sidak correction in region simulations.

#2 brentp closed 12 years ago
3
acf in one pass

#1 brentp closed 12 years ago
0