Caught: java.lang.ClassNotFoundException: org.apache.derby.jdbc.EmbeddedDriver
java.lang.ClassNotFoundException: org.apache.derby.jdbc.EmbeddedDriver
at createDerbyWikidata.run(createDerbyWikidata.groovy:37)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
I assume that one of the bridged jars above is depending on a derby driver, which does not include the 'org.apache.derby.jdbc.EmbeddedDriver' class. When I use a local (very old) derby.jar, as well as BridgeDb 3.0.13, my code works.
Error when running groovy script, grabbing bridgedb jars from maven central:
Error message for ./metaboliteMappings.sh
I assume that one of the bridged jars above is depending on a derby driver, which does not include the 'org.apache.derby.jdbc.EmbeddedDriver' class. When I use a local (very old) derby.jar, as well as BridgeDb 3.0.13, my code works.