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bridgedb / BridgeDb

The BridgeDb Library source code
https://bridgedb.org/
Apache License 2.0
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set up ims.bridgedb.org #37

Open egonw opened 7 years ago

egonw commented 7 years ago

With a public version of the IMS web services developed in Open PHACTS.

egonw commented 7 years ago

Nuno, related, will this have a "Swagger" API you? Can we integrate with the live docs of the non-IRI-based webservice APIs?

nunogit commented 7 years ago

@egonw what do you mean? I can adapt the one from bridgedb. Is that it?

stain commented 7 years ago

there's not many operations in IMS web service, so it should be easy enough to make a swagger file for it.

On 5 December 2016 at 08:53, nunogit notifications@github.com wrote:

@egonw https://github.com/egonw what do you mean? I can adapt the one from bridgedb. Is that what you mean?

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stain commented 7 years ago

I can help dockerize it, it should be pretty similar to the augmented Open PHACTS install.

Where could we host it? Would one of the free cloud services work? It needs a mySQL server and a servlet container for the WAR (e.g. Tomcat or Jetty).

ye old openphacts.cs.man.ac.uk could do it, but seems to have died..

stain commented 7 years ago

http://beta.openphacts.org:3004/QueryExpander/BridgeDbApi is publicly accessible and could work if we just got a https:// proxy without :3004 somewhere.

Not sure if it being public is intentional (TODO Stian: check with D2Discovery folks), but it should work well as that is used by the backend of the Open PHACTS API.

Similarly we have http://heater.cs.man.ac.uk:3004/QueryExpander/BridgeDbApi which I have not put any uptime warranties on.

Both of these are however with the Open PHACTS augmented set of services like the Query expander and lenses.

stain commented 7 years ago

I have reinstalled openphacts.cs.man.ac.uk with Ubuntu 16.04 (sad shutting it down with update 2100 days! ) now seting up IMS with Docker and the 2.1 linksets.

It would look just like http://openphacts.cs.man.ac.uk:3004/QueryExpander/ (bar the funny ports) -- or is it a different web service you want to deploy?

randykerber commented 7 years ago

@stain -- http://beta.openphacts.org:3004/ wasn't public by design, but found it useful to use it occasionally so have intentionally not shut it down, at least not yet.

Regarding URLs, what URLs ideally would redirect to beta:3004? Or for that matter, is there a master list somewhere of all the Open PHACTS URLs that ought to point to something?