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bridgedb / datasources

Repository with the BridgeDb data source.
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update the namespace for HGNC and Ensembl #44

Closed tabbassidaloii closed 3 months ago

tabbassidaloii commented 10 months ago

e.g. https://www.genenames.org/data/hgnc_data.php?hgnc_id= should be replaced with https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/

tabbassidaloii commented 10 months ago

Also, adding unit tests for links out maybe for all the data sources

egonw commented 10 months ago

@tabbassidaloii, oh, that's really weird. This was fixed for HGNC almost a year ago: https://github.com/bridgedb/datasources/commit/edad1320daf605bb80d6b3376f740fc75bd96be4

For Ensembl it seems to work also: https://www.ensembl.org/id/$id with the example ENSG00000139618

What software and which version are you using?

tabbassidaloii commented 10 months ago

Okay, this is weird. I didn't use the most recent version of BridgeDb because of some other issue. I should check. Will share the details.

egonw commented 3 months ago

They still seem to be okay. Ping me on Slack if the problem persists, but will close this issue for now.