"Trying to use CUDA, " \ AssertionError: Trying to use CUDA, but CUDA is not available.

broadinstitute / CellBender

CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

https://cellbender.rtfd.io

BSD 3-Clause "New" or "Revised" License

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"Trying to use CUDA, " \ AssertionError: Trying to use CUDA, but CUDA is not available. #357

Open shnsk1995 opened 4 months ago

shnsk1995 commented 4 months ago

I am trying to run Cell Bender using CUDA. While the remove-background module runs successfully without the --cuda argument, I get the following error when I use the --cuda argument.

AssertionError: Trying to use CUDA, but CUDA is not available.

I am using a research cluster and have loaded Cudatoolkit version 12.2. I have then followed the documentation to install the Cell Bender from source in a virtual conda environment with python3.7. Can someone please suggest some possible solutions?