Traceback (most recent call last):
File "/mnt/9/yuan_jianwen/tools/miniconda/envs/cellbender/lib/python3.7/multiprocessing/queues.py", line 242, in _feed
send_bytes(obj)
File "/mnt/9/yuan_jianwen/tools/miniconda/envs/cellbender/lib/python3.7/multiprocessing/connection.py", line 200, in send_bytes
self._send_bytes(m[offset:offset + size])
File "/mnt/9/yuan_jianwen/tools/miniconda/envs/cellbender/lib/python3.7/multiprocessing/connection.py", line 393, in _send_bytes
header = struct.pack("!i", n)
struct.error: 'i' format requires -2147483648 <= number <= 2147483647.
The embarrassing thing is that I used "for i in files" to run many jobs when they would get stuck because of the error. Removing " --estimator-multiple-cpu" would save the error but sacrifice speed. How can I just let it break instead of Stuck in one step？
I run:
cellbender remove-background \ --input $h5ad \ --output pact5.h5 \ --projected-ambient-count-threshold 5 \ --checkpoint-mins 120 \ --learning-rate 0.0001\ --training-fraction 0.9 \ --low-count-threshold 150 \ --cuda --posterior-batch-size 128 --epochs 150 --estimator-multiple-cpu.
It would get the error:
Traceback (most recent call last): File "/mnt/9/yuan_jianwen/tools/miniconda/envs/cellbender/lib/python3.7/multiprocessing/queues.py", line 242, in _feed send_bytes(obj) File "/mnt/9/yuan_jianwen/tools/miniconda/envs/cellbender/lib/python3.7/multiprocessing/connection.py", line 200, in send_bytes self._send_bytes(m[offset:offset + size]) File "/mnt/9/yuan_jianwen/tools/miniconda/envs/cellbender/lib/python3.7/multiprocessing/connection.py", line 393, in _send_bytes header = struct.pack("!i", n) struct.error: 'i' format requires -2147483648 <= number <= 2147483647.
The embarrassing thing is that I used "for i in files" to run many jobs when they would get stuck because of the error. Removing " --estimator-multiple-cpu" would save the error but sacrifice speed. How can I just let it break instead of Stuck in one step？