Docker container: "Trying to use CUDA, but CUDA is not available."

broadinstitute / CellBender

CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.

https://cellbender.rtfd.io

BSD 3-Clause "New" or "Revised" License

299 stars 54 forks source link

Docker container: "Trying to use CUDA, but CUDA is not available." #387

Closed onurcanbektas closed 1 month ago

onurcanbektas commented 1 month ago

In the latest version and the version 0.3.2 of the (updated) docker containers, I get the following error.

Trying to use CUDA, but CUDA is not available.

The containers are run inside a machine with Nvidia GPU and CUDA installed, and I had no problem running the cellbender on these machine before. I stumbled upon the negative count issue, and re-downloaded the containers, but now I get the above error. Is is possible that CUDA is not available in the containers.