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broadinstitute / depmap_omics

What you need to process the Quarterly DepMap-Omics releases from Terra
https://depmap.org/portal/
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Update rna pipeline for crams #230

Closed 5im1z closed 2 months ago

5im1z commented 2 months ago

Ensure that the samtofastq task localizes the ref index so it can handle cram. The same workflow can be run on both bam and cram