investigate callstat and VCF generation script

broadinstitute / gnomad_local_ancestry

Hail batch pipeline and scripts for local ancestry inference

MIT License

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Closed mike-w-wilson closed 2 years ago

mike-w-wilson commented 2 years ago

Pipeline results appear to be off for rare variants in admixed populations. Confirm that the VCF generation script is functioning appropriately.

mike-w-wilson commented 2 years ago

Tractor had a bug that caused a misread of the vcf ancestry windows