Error with runEM in runIchorCNA.R

broadinstitute / ichorCNA

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

GNU General Public License v3.0

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Error with runEM in runIchorCNA.R #98

Open N-TI opened 3 years ago

N-TI commented 3 years ago

Hello,

I have this error message when I try to run runIchorCNA.R!

Error in runEM(dataMat, chr, chrInd, param, maxiter, verbose, estimateNormal = estimateNormal,  :
  INTEGER() can only be applied to a 'integer', not a 'NULL'
Calls: HMMsegment -> runEM
Execution halted

Can someone help me with this issue please? Thank you

LN908 commented 2 years ago

Hi,

I am having this same issue. Did you figure it out? This only happens when I try to add the exons.bed file to config.yaml

mokhouja commented 1 year ago

Hi, I am having the same issue while using exons.bed or without. Have you found any solution? Thanks

Salaheddinekacimi commented 1 year ago

I am facing the same issue. Have you found any solution?