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broadinstitute
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monorepo
Compendium of tools for the Imaging Platform
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Trommel
#54
afermg
closed
2 days ago
0
broad.io/crispr and /orf are failing with datasette error
#53
AnneCarpenter
closed
2 days ago
3
CRISPR_feature has no data but CRISPR matches does, for DDX3X gene
#52
AnneCarpenter
opened
2 weeks ago
1
fixed wrong crispr_feature link
#51
AnneCarpenter
closed
2 days ago
0
Create jump-smiles README
#50
shntnu
closed
2 weeks ago
4
Inconsistency between Morphmap cosine similarities and JUMP_rr
#49
afermg
closed
3 weeks ago
6
Add new library: dataset_versioner
#48
shntnu
closed
1 month ago
3
jump_smiles: Drop conda in favor of poetry
#47
shntnu
closed
2 months ago
0
Cleanup standardize_smiles.py
#46
shntnu
closed
1 month ago
0
Fringe cases with duplicated metadata
#45
HugoHakem
opened
2 months ago
0
Add get_jump_image_iter, fix tqdm
#44
HugoHakem
closed
2 days ago
1
Function documentation out of date
#43
HugoHakem
opened
3 months ago
3
Server Configuration Evaluation Plan
#42
shntnu
opened
5 months ago
0
Potential additional analytical methods
#41
afermg
opened
6 months ago
0
CRISPR landing page requires a click
#40
AnneCarpenter
closed
6 months ago
3
Organise jump_rr columns using the metadata file
#39
afermg
closed
2 months ago
1
Add CRISPR/ORF/compound identifiers to babel
#38
afermg
closed
3 months ago
1
Make link to here from JUMP
#37
AnneCarpenter
closed
6 months ago
2
update typo for jump compounds URL
#36
AnneCarpenter
closed
6 months ago
0
Fix compressed image URL, add additional tests for get_jump_image
#35
ashah03
closed
7 months ago
1
Portrait
#34
afermg
closed
7 months ago
0
Babel
#33
afermg
closed
7 months ago
0
Add compressed and staging options to get_jump_image
#32
ashah03
closed
7 months ago
1
Formalise method to distribute Code Review Asignees.
#31
afermg
closed
7 months ago
2
Pull from inchi
#30
johnarevalo
closed
7 months ago
0
Revert MetadataJCP2022 to its original state for controls
#29
afermg
closed
7 months ago
1
more annotations
#28
johnarevalo
opened
7 months ago
3
update dgidb url and README.md
#27
johnarevalo
closed
7 months ago
1
Upgrade data source for broad.io/orf and broad.io/crispr to final MorphMap paper profiles
#26
AnneCarpenter
closed
2 months ago
1
Add phenotypic activity (replicate reproducibility) to broad.io/orf and broad.io/crispr
#25
AnneCarpenter
closed
2 months ago
14
Homogenise chemical sources
#24
afermg
opened
7 months ago
2
Add SMILES standardizer code
#23
shntnu
closed
2 months ago
3
Relationship to jump-cellpainting/compound-annotator
#22
shntnu
closed
7 months ago
7
Schema/Metadata error when reading load_data_with_illum.parquet using polars
#21
afermg
closed
8 months ago
4
Add option for compressed images in jump_portrait
#20
ashah03
closed
7 months ago
3
No credential-less access to AWS via polars
#19
afermg
closed
8 months ago
0
Label the page ORF or CRISPR
#18
AnneCarpenter
closed
6 months ago
5
Consider gene resource to link out to
#17
AnneCarpenter
opened
9 months ago
2
chore(deps): bump aiohttp from 3.9.1 to 3.9.2 in /libs/jump_portrait
#16
dependabot[bot]
closed
9 months ago
1
chore(deps-dev): bump jupyterlab from 4.0.9 to 4.0.11 in /libs/jump_babel
#15
dependabot[bot]
closed
7 months ago
1
chore(deps-dev): bump jupyterlab from 4.0.9 to 4.0.11 in /libs/jump_compound_annotator
#14
dependabot[bot]
closed
7 months ago
1
chore(deps-dev): bump jupyterlab from 4.0.9 to 4.0.11 in /libs/jump_portrait
#13
dependabot[bot]
closed
7 months ago
1
chore(deps-dev): bump notebook from 7.0.6 to 7.0.7 in /libs/jump_portrait
#12
dependabot[bot]
closed
7 months ago
1
chore(deps-dev): bump notebook from 7.0.6 to 7.0.7 in /libs/jump_babel
#11
dependabot[bot]
closed
7 months ago
1
chore(deps-dev): bump notebook from 7.0.6 to 7.0.7 in /libs/jump_compound_annotator
#10
dependabot[bot]
closed
7 months ago
1
chore(deps-dev): bump jupyter-lsp from 2.2.1 to 2.2.2 in /libs/jump_portrait
#9
dependabot[bot]
closed
7 months ago
1
chore(deps-dev): bump jupyter-lsp from 2.2.1 to 2.2.2 in /libs/jump_babel
#8
dependabot[bot]
closed
7 months ago
1
chore(deps-dev): bump jupyter-lsp from 2.2.1 to 2.2.2 in /libs/jump_compound_annotator
#7
dependabot[bot]
closed
7 months ago
1
chore(deps-dev): bump jinja2 from 3.1.2 to 3.1.3 in /libs/jump_portrait
#6
dependabot[bot]
closed
10 months ago
1
chore(deps-dev): bump jinja2 from 3.1.2 to 3.1.3 in /libs/jump_compound_annotator
#5
dependabot[bot]
closed
7 months ago
1
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