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broadinstitute / monorepo

Compendium of tools for the Imaging Platform
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Potential additional analytical methods #41

Open afermg opened 6 months ago

afermg commented 6 months ago

Based off https://github.com/jump-cellpainting/morphmap/issues/2.

Two additional analyses (which require very different methods are:

  1. Clustering/representation space of disease clusters. This can be done with simple clustering or a representation learning approach.
    1. Collective significant features for a given disease. This is doable with our current tools, may just require repurposing the GPU-based methods to compare individuals, or the p-values comparing distributions. If we are to keep it simple, the Earth Mover's Distance metric may come in handy.