Closed Firedrops closed 5 years ago
I have downloaded the .jar release, and java -jar pilon.jar returns
java -jar pilon.jar
Pilon version 1.23 Mon Nov 26 16:04:05 2018 -0500 Usage: pilon --genome genome.fasta [--frags frags.bam] [--jumps jumps.bam] [--unpaired unpaired.bam] [...other options...] pilon --help for option details
but pilon --help or pilon anything returns bash: pilon: command not found.
pilon --help
pilon anything
bash: pilon: command not found
Am I still missing a step to correct usage?
Circumvented by installing via conda instead. Really should be in official documentation, only found this method from Googling.
conda
I have downloaded the .jar release, and
java -jar pilon.jar
returnsbut
pilon --help
orpilon anything
returnsbash: pilon: command not found
.Am I still missing a step to correct usage?