When using Pilon v1.23, I noticed the number of alternate alleles found in each strand (forward and reverse) is not reported.
-Is there a way I can get this information from Pilon's output files?
-Is it accurate to repeat variant calling in sites of interest with a software that provides this info (e.g FreeBayes or Samtools)?
Hi!
When using Pilon v1.23, I noticed the number of alternate alleles found in each strand (forward and reverse) is not reported.
-Is there a way I can get this information from Pilon's output files? -Is it accurate to repeat variant calling in sites of interest with a software that provides this info (e.g FreeBayes or Samtools)?
Thank in advance.