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broadinstitute / pilon

Pilon is an automated genome assembly improvement and variant detection tool
GNU General Public License v2.0
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negative effect of using only PE reads with --fix all #80

Closed mictadlo closed 5 years ago

mictadlo commented 5 years ago

Hi all, Does it have a negative effect of using only PE reads with --fix all?

Thank you in advance,

Michal

w1bw commented 5 years ago

No, many of us routinely use it with only PE reads. Good luck!