unknown option --nanopore

broadinstitute / pilon

Pilon is an automated genome assembly improvement and variant detection tool

GNU General Public License v2.0

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unknown option --nanopore #83

Open MichelMoser opened 5 years ago

MichelMoser commented 5 years ago

Dear Pilon developers,

I would like to test the new feature of Pilon 1.23 including nanopore and Illumina reads to polish the assemblies. Unfortunately, i dont find the input option on the command-line.

java -jar pilon-1.23.jar --pacbio                    
Pilon version 1.23 Mon Nov 26 16:04:05 2018 -0500                              
Unknown option --nanopore

Am i missing something?

Best, Michel