When running pilon on some medaka output, i get following error:
Exception in thread "main" java.lang.ArithmeticException: / by zero
at org.broadinstitute.pilon.GenomeFile.contigRegions(GenomeFile.scala:71)
at org.broadinstitute.pilon.GenomeFile.$anonfun$regions$1(GenomeFile.scala:53)
at scala.collection.immutable.List.map(List.scala:286)
at org.broadinstitute.pilon.GenomeFile.(GenomeFile.scala:53)
at org.broadinstitute.pilon.Pilon$.main(Pilon.scala:102)
at org.broadinstitute.pilon.Pilon.main(Pilon.scala)
I checked for contigs with length 0 but shortest contig in assembly is 4 bases.
It it creating the error?
Dear Pilon developers,
When running pilon on some medaka output, i get following error:
Exception in thread "main" java.lang.ArithmeticException: / by zero at org.broadinstitute.pilon.GenomeFile.contigRegions(GenomeFile.scala:71) at org.broadinstitute.pilon.GenomeFile.$anonfun$regions$1(GenomeFile.scala:53) at scala.collection.immutable.List.map(List.scala:286) at org.broadinstitute.pilon.GenomeFile.(GenomeFile.scala:53)
at org.broadinstitute.pilon.Pilon$.main(Pilon.scala:102)
at org.broadinstitute.pilon.Pilon.main(Pilon.scala)
I checked for contigs with length 0 but shortest contig in assembly is 4 bases. It it creating the error?
Thanks, Michel