Open NicMAlexandre opened 5 years ago
pilon -Xmx1000G --genome BTH.fasta --frags aln_chi.bam --output pilon1 --fix all --mindepth 0.5 --changes --verbose --threads 20
The following is my job, which when I submit, gets to the Scanning BAMs stage and the job ends with no output.
If I reduce -Xmx at all, I get the following:
#
Although I see many threads about this issue, I'm not sure how to split the job into multiple targets.
pilon -Xmx1000G --genome BTH.fasta --frags aln_chi.bam --output pilon1 --fix all --mindepth 0.5 --changes --verbose --threads 20
The following is my job, which when I submit, gets to the Scanning BAMs stage and the job ends with no output.