issues
search
broadinstitute
/
regional_missense_constraint
Code to calculate regional missense constraint
BSD 3-Clause "New" or "Revised" License
12
stars
1
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Basic question of using the MPC pipeline
#311
ryshi06
opened
5 days ago
0
Inquiry on Availability of MPC Scores for Latest gnomAD Data
#310
gmerolli00
closed
1 month ago
2
Runtime fixes for v4
#309
ch-kr
closed
4 days ago
2
Yet another PR to support GRCh38
#308
ch-kr
closed
1 month ago
0
Final PR to migrate region code to GRCh38
#307
ch-kr
closed
1 month ago
0
Continue working to support build 38
#306
ch-kr
closed
1 month ago
0
Begin supporting GRCh38
#305
ch-kr
closed
1 month ago
0
Add validity checks for RMC release
#304
ch-kr
closed
2 months ago
0
Add argument to control MPC dedup prior to liftover
#303
ch-kr
closed
2 months ago
0
Small liftover fix
#302
ch-kr
closed
8 months ago
0
Deduplicate MPC prior to liftover
#301
ch-kr
closed
8 months ago
0
Liftover
#300
ch-kr
closed
8 months ago
0
Small runtime fix for RMC release
#299
ch-kr
closed
10 months ago
0
PR adding code to create public release (downloadable files)
#298
ch-kr
closed
10 months ago
0
Runtime branch for RMC freeze7
#297
Ruchit10
closed
1 year ago
0
Pytest
#296
ch-kr
closed
1 year ago
0
Use true expected values in RMC (+ flexibility for non-mis)
#295
lw453
closed
1 year ago
0
Browser release updates
#294
ch-kr
closed
1 year ago
0
Fix actions
#293
ch-kr
closed
1 year ago
0
Repo set up updates
#292
ch-kr
closed
1 year ago
2
Flexibility updates for training transcript sets for missense badness and MPC
#291
lw453
closed
1 year ago
0
Add blosum and grantham compatibility to calculate_fitted_scores
#290
Ruchit10
closed
1 year ago
0
Expand MPC code to evaluate regression models with all combinations of variables including BLOSUM/Grantham
#289
Ruchit10
closed
1 year ago
0
Fixes for missense badness training/validation/testing
#287
lw453
closed
1 year ago
1
MPC variants update
#286
ch-kr
closed
1 year ago
0
Update missense badness for training/validation/testing
#285
lw453
closed
1 year ago
0
HC pLoF filter for missense badness
#284
ch-kr
closed
1 year ago
0
Misbad and MPC runtime fixes
#283
ch-kr
closed
1 year ago
2
Rearrange RMC and generic code
#282
lw453
closed
1 year ago
2
Reference data bug fixes
#281
ch-kr
closed
1 year ago
0
Update globals of final RMC HT
#280
ch-kr
closed
1 year ago
0
Add missing int around arg
#279
ch-kr
closed
1 year ago
0
mypy and isort
#278
ch-kr
closed
1 year ago
2
Fix2
#277
lw453
closed
1 year ago
0
Runtime fixes
#276
ch-kr
closed
1 year ago
0
Moved comment in precommit
#275
ch-kr
closed
1 year ago
0
Suggestion for abstracting copy_logs_when_finished
#274
illusional
closed
2 months ago
2
Moving SLACK_TOKEN to environment variable + make optional
#273
illusional
closed
2 months ago
0
Suggestion for implementating native requester pays bucket function
#272
illusional
closed
2 months ago
0
Update requirements.txt
#271
illusional
closed
1 year ago
0
Add mypy to pre-commit
#270
illusional
closed
1 year ago
6
Address MYPY suggestions
#269
illusional
closed
1 year ago
0
Use pre-commit in CI
#268
illusional
closed
1 year ago
1
Add pylint to pre-commit
#267
illusional
closed
1 year ago
0
Adding freeze argument and allowing for easier re-runs
#266
ch-kr
closed
1 year ago
3
Reference data update
#265
ch-kr
closed
1 year ago
1
Fix log10 > ln
#264
ch-kr
closed
1 year ago
0
Fixes to missense badness and MPC
#263
ch-kr
closed
1 year ago
0
Update Docker image and add freeze
#262
ch-kr
closed
1 year ago
2
Assess freeze 2 RMC and MPC results
#261
lw453
closed
1 year ago
1
Next