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bulik / ldsc

LD Score Regression (LDSC)
GNU General Public License v3.0
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change .l2.ldscore file format #18

Closed bulik closed 9 years ago

bulik commented 9 years ago

we're not using the CM or MAF fields.

the chr and bp fields are only used for sorting the LD Scores in parse.py, but this might be overcautious, since ldsc always prints sorted LD Scores

bulik commented 9 years ago

removed the CM and MAF fields switched all remaining float fields to 3 decimal places should save a lot of space

this is backwards compatible: ldscore.parse.l2_parser checks for MAF and CM columns. if it finds them, it drops them. if it doesn't find them, then it does nothin.