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bxlab
/
bx-python
Tools for manipulating biological data, particularly multiple sequence alignments
MIT License
144
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53
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Tests do not run in PEP517 out-of-source build (gentoo)
#101
mschubert
opened
1 month ago
5
Extend linting with ruff
#100
nsoranzo
opened
1 month ago
0
0.12.0: Fails to build: error: incompatible integer to pointer conversion assigning to 'void **' from 'int'
#99
yurivict
opened
1 month ago
1
Build errors on osx-arm64 (bioconda)
#98
corneliusroemer
closed
1 month ago
2
Fix typos
#97
mr-c
opened
1 month ago
0
remove psyco, it is only available for Python <= 2.6
#96
mr-c
closed
1 month ago
0
Fix import statement s/cookbook/bx.cookbook/
#95
mr-c
closed
1 month ago
0
Fix include for `strlen()`
#94
mr-c
closed
5 months ago
3
post install testing
#93
mr-c
closed
6 months ago
2
Add pytest 8.x compatibility
#92
mr-c
closed
6 months ago
1
Fix compilation with cython 3
#91
mvdbeek
closed
1 year ago
7
From NumPy 1.24.0 ``np.float`` is deprecated
#90
lldelisle
closed
1 year ago
8
fix exception message
#89
lldelisle
closed
1 year ago
0
ERROR Missing dependencies: oldest-supported-numpy
#88
brobr
closed
11 months ago
2
Format Python code with `black` and `isort`
#87
nsoranzo
closed
2 years ago
0
Skip building also other musllinux wheels
#86
nsoranzo
closed
2 years ago
0
Index TwoBitFile sequences by str not bytes
#85
nsoranzo
closed
2 years ago
0
Fix new E275 linting error
#84
nsoranzo
closed
2 years ago
0
Upgrade GitHub Actions
#83
cclauss
closed
2 years ago
4
upgrading bx-python to newer versions of python
#82
adeslatt
closed
2 years ago
1
multiple sequence alignment
#81
huangnengCSU
opened
2 years ago
0
add 32bit test
#80
mr-c
opened
2 years ago
0
Add Linux AArch64 wheel build support
#79
odidev
closed
2 years ago
2
Add support to release linux aarch64 wheels
#78
odidev
closed
2 years ago
1
Improve maf handling
#77
lldelisle
closed
2 years ago
8
documentation?
#76
mufernando
opened
3 years ago
3
0.8.11 Doesn't install some built shared libraries
#75
yurivict
closed
3 years ago
8
Added ref to Debian package to README
#74
smoe
closed
3 years ago
0
undefined symbol: PyUnicodeUCS2_FromStringAndSize
#73
jingydz
closed
3 years ago
3
AddingPowerSupport_CI/Testing
#72
santosh653
closed
2 years ago
3
Failed to load seekbzip2 module when dealing with bz2 files
#71
songtaogui
closed
3 years ago
1
Fix ``lzop_build_offset_table.py`` and ``maf_build_index.py`` scripts under Python 3
#70
nsoranzo
closed
3 years ago
0
How to dealing with maf files compressed with bzip2 or lzop ?
#69
songtaogui
closed
3 years ago
4
Got wrong positions on chomped query maf subset
#68
songtaogui
closed
3 years ago
2
binned_bitsets_from_list errors when chromosome size is larger than set MAX (512M)
#67
zxl124
opened
4 years ago
1
ImportError: undefined symbol: PyUnicodeUCS2_FromStringAndSize
#66
prullens
closed
4 years ago
1
Misc fixes
#65
nsoranzo
closed
4 years ago
0
Use chain.from_iterable in bed_coverage.py
#64
cool-RR
closed
4 years ago
1
time.clock has been removed in Python 3.8
#63
tirkarthi
closed
4 years ago
0
Importing ABC directly from collections was deprecated and will be removed in Python 3.10. Use collections.abc
#62
tirkarthi
closed
4 years ago
0
get on bx.align.maf.MAFIndexedAccess results in wrong alignment blocks
#61
dandaman
closed
4 years ago
4
error can't found bx.intervals module
#60
shiyi-pan
closed
4 years ago
0
No source tarballs for the release 0.8.8 on the PyPI website
#59
yurivict
closed
4 years ago
1
Restore NiceReaderWrapper.current_line
#58
mvdbeek
closed
4 years ago
4
StopIteration fix
#57
mvdbeek
closed
4 years ago
4
StopIteration transformed to RuntimeError on python >= 3.7
#56
mvdbeek
closed
4 years ago
0
add 32bit test
#55
mr-c
closed
2 years ago
1
fix error for 32bit systems
#54
mr-c
opened
4 years ago
8
Fix all flake8 and many other errors
#53
nsoranzo
closed
4 years ago
0
Fix #47
#52
nsoranzo
closed
4 years ago
0
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