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calico / basenji

Sequential regulatory activity predictions with deep convolutional neural networks.
Apache License 2.0
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Error in running basenji_data.py #138

Open luohaitaofujian opened 2 years ago

luohaitaofujian commented 2 years ago 
python basenji_data.py -d .1 -g data/unmap_macro.bed -l 384 --local -o data/heart_l131k -p 8 -t .1 -v .1 -w 128 data/ma.fna data/heart_wigs.txt

stride_train 1 converted to 384.000000 stride_test 1 converted to 384.000000 I'm confused by this event ordering: cstart - gend

How can I deal with the problem? Thank you!

davek44 commented 2 years ago

Hi, I've seen this problem before when I accidentally mismatched the reference genome FASTA and the other files. Could you double check that all of your files refer to the same reference genome, and it's the one specified?