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calico / basenji

Sequential regulatory activity predictions with deep convolutional neural networks.
Apache License 2.0
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Weird targets #167

Open yardenmatok203 opened 1 year ago

yardenmatok203 commented 1 year ago

hey, how are you?

I am getting the following: image

what can be worng?

Thank you, yarden

gfudenberg commented 1 year ago

Hi Yarden, It looks like the Hi-C data for HFF in the region where you are asking for a prediction may be very low coverage, perhaps because it is in an unmappable region like a centromere. Note that predictions in such regions may be less reliable, as they are not included in training!

yardenmatok203 commented 1 year ago

ok, thanks!