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calico / basenji

Sequential regulatory activity predictions with deep convolutional neural networks.
Apache License 2.0
410 stars 126 forks source link

Basenji installation issues #194

Closed seraphimangel77 closed 5 months ago

seraphimangel77 commented 6 months ago

I followed the commands: conda env create -f prespecified.yml conda install tensorflow (or tensorflow-gpu) python setup.py develop --no-deps

to install Basenji, and I installed all the required packages. However, when I try to import basenji, I always get the error: ModuleNotFoundError: No module named 'basenji'. What could be the problem? Could you advise on how to resolve this issue?"

Thank you so much! Look forward your response! Thanks!

seraphimangel77 commented 6 months ago

If possible, could you do me a huge favor that you provide a Docker image? Thank you so much!

seraphimangel77 commented 6 months ago

I also tried the other two installation methods you provided, which both showed successful installations, but I still can't import.

Weixin Image_20240515023450 Weixin Image_20240515023532
davek44 commented 6 months ago

Hi, please move to our new codebase here: https://github.com/calico/baskerville

seraphimangel77 commented 6 months ago

Hi, Is this where Basenji is installed? It seems I can't find Basenji in here?

Thank you