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camlab-bioml
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starling
Segmentation error aware clustering for multiplexed imaging
https://camlab-bioml.github.io/starling/
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add info about input file, fix spelling
#55
cklamann
closed
5 days ago
0
Release 0.1.4
#54
cklamann
closed
1 month ago
0
Error when using init_clustering with FlowSom method
#53
DC123456789
closed
1 month ago
1
update torch, lightning, scanpy
#52
cklamann
closed
1 month ago
0
TypeError: Cannot convert a MPS Tensor to float64 dtype as the MPS framework doesn't support float64. Please use float32 instead.
#51
angelcymak
opened
2 months ago
0
Runtime error on python3.9
#50
kieranrcampbell
opened
2 months ago
0
Add support for python 3.10
#49
cklamann
closed
2 months ago
0
Change marker pairs used for plausibility score calculation
#48
ChaDub
opened
2 months ago
0
Packaging
#47
cklamann
closed
2 months ago
0
cannot use cpu?
#46
SarahAsbury
opened
3 months ago
0
Issues 42, 43, 44
#45
cklamann
closed
2 months ago
0
init clustering with "User" specified doesn't work if user supplied clusters are not consecutive integers
#44
kieranrcampbell
closed
2 months ago
2
k still required even when cluster initialization is "User"
#43
kieranrcampbell
closed
2 months ago
1
Not using cell size throws error
#42
kieranrcampbell
closed
2 months ago
2
hide output from verbose cells to cleanup tutorial
#41
cklamann
closed
4 months ago
0
Wrap lightning's `train` as an ST method
#40
cklamann
closed
4 months ago
0
Add Colab Link to README
#39
cklamann
closed
5 months ago
0
Notebook in readme no longer links to interactive session
#38
kieranrcampbell
closed
5 months ago
0
Add Basic GitHub Actions and Sphinx/RTD Auto-Documentation
#37
cklamann
closed
7 months ago
0
Add basic type hints, doc strings, validation, and high-level tests
#36
cklamann
closed
7 months ago
0
Use Leiden algorithm and add argument for resolution in Phenograph option in utility.init_clustering()
#35
DC123456789
opened
9 months ago
1
Import errors in getting-started.ipynb
#34
DC123456789
opened
9 months ago
0
requirements.txt file misspelled
#33
DC123456789
opened
9 months ago
0
Bump release-drafter/release-drafter from 5.20.0 to 5.25.0
#32
dependabot[bot]
opened
11 months ago
0
Bump colorama from 0.4.4 to 0.4.6
#31
dependabot[bot]
closed
11 months ago
1
Bump mdit-py-plugins from 0.3.0 to 0.3.5
#30
dependabot[bot]
closed
11 months ago
1
Bump tornado from 6.1 to 6.2
#29
dependabot[bot]
closed
11 months ago
1
Bump markupsafe from 2.1.1 to 2.1.3
#28
dependabot[bot]
closed
11 months ago
1
Bump mypy-extensions from 0.4.3 to 1.0.0
#27
dependabot[bot]
closed
11 months ago
1
Bump codecov/codecov-action from 3.1.0 to 3.1.4
#26
dependabot[bot]
closed
11 months ago
1
Bump pypa/gh-action-pypi-publish from 1.5.0 to 1.8.10
#25
dependabot[bot]
opened
11 months ago
0
Bump sphinx-click from 4.1.0 to 5.0.1 in /docs
#24
dependabot[bot]
opened
11 months ago
0
Bump furo from 2022.4.7 to 2023.9.10 in /docs
#23
dependabot[bot]
opened
11 months ago
0
Bump myst-parser from 0.17.2 to 2.0.0 in /docs
#22
dependabot[bot]
opened
11 months ago
0
Bump sphinx from 4.5.0 to 7.2.6 in /docs
#21
dependabot[bot]
opened
11 months ago
0
Bump atomicwrites from 1.4.0 to 1.4.1
#20
dependabot[bot]
closed
11 months ago
1
Bump distlib from 0.3.4 to 0.3.7
#19
dependabot[bot]
closed
11 months ago
1
Bump pre-commit-hooks from 4.2.0 to 4.4.0
#18
dependabot[bot]
closed
11 months ago
1
Bump virtualenv from 20.14.1 to 20.16.2
#17
dependabot[bot]
closed
11 months ago
1
Bump stevedore from 3.5.0 to 3.5.2
#16
dependabot[bot]
closed
11 months ago
1
Bump poetry from 1.1.13 to 1.6.1 in /.github/workflows
#15
dependabot[bot]
closed
11 months ago
1
Bump fcsparser from 0.2.4 to 0.2.7 in /docs
#14
dependabot[bot]
closed
11 months ago
1
Bump nox-poetry from 1.0.0 to 1.0.3 in /.github/workflows
#13
dependabot[bot]
closed
11 months ago
1
Bump jupyter-server from 1.18.1 to 2.7.3 in /docs
#12
dependabot[bot]
closed
11 months ago
1
Bump crazy-max/ghaction-github-labeler from 4.0.0 to 5.0.0
#11
dependabot[bot]
closed
11 months ago
1
Bump virtualenv from 20.14.1 to 20.24.5 in /.github/workflows
#10
dependabot[bot]
closed
11 months ago
1
Bump salsify/action-detect-and-tag-new-version from 2.0.1 to 2.0.3
#9
dependabot[bot]
closed
11 months ago
1
Bump attrs from 21.4.0 to 23.1.0 in /docs
#8
dependabot[bot]
closed
11 months ago
1
Bump actions/setup-python from 3 to 4
#7
dependabot[bot]
closed
11 months ago
1
Bump pip from 22.1.2 to 23.3 in /.github/workflows
#6
dependabot[bot]
closed
11 months ago
1
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