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cancerit / cgpCaVEManWrapper

Reference implementation of CGP workflow for CaVEMan SNV analysis
http://cancerit.github.io/cgpCaVEManWrapper/
GNU Affero General Public License v3.0
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arg default doesn't match cli help: read-count #53

Open keiranmraine opened 4 years ago

keiranmraine commented 4 years ago

CLI help indicates 350,000 as the default:

https://github.com/cancerit/cgpCaVEManWrapper/blob/84f952a78ab9adb23d04a187e093ef8669f147fa/bin/caveman.pl#L552

Constant is 500,000:

https://github.com/cancerit/cgpCaVEManWrapper/blob/84f952a78ab9adb23d04a187e093ef8669f147fa/bin/caveman.pl#L68