cancerit / cgpPindel

Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel
http://cancerit.github.io/cgpPindel/
GNU Affero General Public License v3.0
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pindel_merge_vcf_bam.pl fails when SAM outputf have no records #40

Closed keiranmraine closed 9 years ago

keiranmraine commented 9 years ago

Errors thrown by bamsort (biobambam) appear to be due to header indicating unsorted and no reads available to evaluate.