Feature/single read qc fail handling and new pindel

cancerit / cgpPindel

Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel

http://cancerit.github.io/cgpPindel/

GNU Affero General Public License v3.0

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Closed keiranmraine closed 5 years ago

keiranmraine commented 5 years ago

This has already been through testing in canPipe but we need to merge and create a release from it now.

@drjsanger can you do a sanity check? @AndyMenzies has verified the results with scientific staff so I'm pretty sure its fine.

keiranmraine commented 5 years ago

BioPerl has changed again and broken the build... investigating now