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disease-normalization
Services and guidelines for normalizing disease terms
https://disease-normalizer.readthedocs.io/latest/
MIT License
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fix: update preferred OMIM prefix
#198
jsstevenson
closed
1 month ago
0
All mondo xrefs are broken
#197
jsstevenson
opened
1 month ago
0
cicd: update workflows/templates from template repo
#196
korikuzma
closed
1 month ago
0
feat: update pre-commit version + add more hooks
#195
korikuzma
closed
1 month ago
0
feat!: use setuptools-scm, capture version at package root
#194
korikuzma
closed
1 month ago
0
build!: update ga4gh.vrs version
#193
korikuzma
closed
1 month ago
0
style: update ruff to 0.5.0
#192
korikuzma
closed
1 month ago
0
build: require >= Python 3.10
#191
korikuzma
closed
1 month ago
0
Add `omim-directory` console entrypoint
#190
jsstevenson
opened
2 months ago
0
fix: don't configure logging on library import
#189
jsstevenson
closed
3 months ago
0
feat: add tqdm to track update progress
#188
jsstevenson
closed
4 months ago
0
docs: fix readthedocs links
#187
korikuzma
closed
5 months ago
0
readthedocs in readme give 404
#186
korikuzma
closed
5 months ago
0
docs: clean up README
#185
jsstevenson
closed
5 months ago
0
docs: add RTD config
#184
jsstevenson
closed
5 months ago
0
cicd: test on 3.12
#183
jsstevenson
closed
5 months ago
0
cicd: add priority label requirement
#182
jsstevenson
closed
5 months ago
0
build: update build metadata
#181
jsstevenson
closed
5 months ago
0
Update OMIM refs in Disease Ontology
#180
jsstevenson
closed
1 month ago
1
style: update ruff rules
#179
jsstevenson
closed
7 months ago
0
docs: add docs skeleton
#178
jsstevenson
closed
5 months ago
0
style: update ruff rules
#177
jsstevenson
closed
7 months ago
0
Use Mondo ID instead of NCIt ID to designate normalized groups
#176
jsstevenson
opened
7 months ago
1
fix: ensure consistent source meta schema typing
#175
jsstevenson
closed
8 months ago
0
Expected `SourceMeta` but got `dict` - serialized value may not be as expected
#174
korikuzma
closed
8 months ago
0
Refine `Base.load_disease()`
#173
jsstevenson
opened
9 months ago
1
Pickier ingest of xrefs/associated_with
#172
jsstevenson
opened
9 months ago
2
feat!: use OBO release for Mondo
#171
jsstevenson
closed
9 months ago
0
style: fix ruff settings
#170
jsstevenson
closed
9 months ago
0
test: suppress noisy boto logs by default
#169
jsstevenson
closed
9 months ago
0
cicd: use ruff for formatting
#168
jsstevenson
closed
9 months ago
0
test: add basic route tests
#167
jsstevenson
closed
10 months ago
0
chore: remove unused configs
#166
jsstevenson
closed
10 months ago
0
fix: catch ETL module import errors
#165
jsstevenson
closed
10 months ago
0
feat!: remove search result formatting options
#164
jsstevenson
closed
10 months ago
0
feat!: use wags-tails for managing data
#163
jsstevenson
closed
9 months ago
0
feat!: merge concepts and source dynamodb tables
#162
jsstevenson
closed
10 months ago
0
build: use pyproject.toml for build configuration
#161
jsstevenson
closed
10 months ago
1
feat: add get_all_records DB method
#160
jsstevenson
closed
10 months ago
1
Use pyproject.toml for setup/build
#159
jsstevenson
closed
9 months ago
1
Add basic route tests
#158
jsstevenson
opened
11 months ago
1
Catch ETL import errors in CLI
#157
jsstevenson
closed
9 months ago
1
Remove format option in /search
#156
jsstevenson
opened
11 months ago
1
merge concepts + metadata tables
#155
korikuzma
closed
9 months ago
1
build: modernize build config
#154
jsstevenson
closed
10 months ago
0
fix!: use better name for CLI source option
#153
jsstevenson
closed
11 months ago
0
feat: optionally define dynamo table names via env variable
#152
jsstevenson
closed
11 months ago
0
test: update test data
#151
jsstevenson
closed
11 months ago
0
cicd: update release.yml (publish python distribution to pypi)
#150
korikuzma
closed
11 months ago
0
cicd: update release.yml (publish python distribution to pypi)
#149
korikuzma
closed
11 months ago
0
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