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caozhichongchong / arg_ranker

MIT License
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we haven't finder the database all_KO30.pro.fasta #2

Closed liaohu1231 closed 2 years ago

liaohu1231 commented 3 years ago

Opening the database file... No such file or directory [0.125s] Error: Error opening file /public3/home/sc52870/miniconda3/lib/python3.8/site-packages/arg_ranker-2.8.1-py3.8.egg/arg_ranker/data/all_KO30.pro.fasta Please run sh /public3/home/sc52870/25_metagenome/R17/arg_ranking/script_output//arg_ranker.sh

caozhichongchong commented 2 years ago

Hi,

Thank you so much for reaching out! Sorry about this late reply.

Please re-install the newest arg_ranker (v2.8.3) by running _pip uninstall arg_ranker pip install argranker

If it doesn't work, please contact me (anniz44@mit.edu). Thank you again!

Best regards, Anni

caozhichongchong commented 2 years ago

Hi,

I have noticed an error of arg_ranker.v2 when reporting the total ARG abundance in metagenomes. If the total ARG abundance is used in your research, please refer to https://github.com/caozhichongchong/arg_ranker for more details! I'm really sorry about this inconvenience! Please feel free to reach out to me if you have any questions.

Best regards, Anni