Closed liaohu1231 closed 2 years ago
Hi,
Thank you so much for reaching out! Sorry about this late reply.
Please re-install the newest arg_ranker (v2.8.3) by running _pip uninstall arg_ranker pip install argranker
If it doesn't work, please contact me (anniz44@mit.edu). Thank you again!
Best regards, Anni
Hi,
I have noticed an error of arg_ranker.v2 when reporting the total ARG abundance in metagenomes. If the total ARG abundance is used in your research, please refer to https://github.com/caozhichongchong/arg_ranker for more details! I'm really sorry about this inconvenience! Please feel free to reach out to me if you have any questions.
Best regards, Anni
Opening the database file... No such file or directory [0.125s] Error: Error opening file /public3/home/sc52870/miniconda3/lib/python3.8/site-packages/arg_ranker-2.8.1-py3.8.egg/arg_ranker/data/all_KO30.pro.fasta Please run sh /public3/home/sc52870/25_metagenome/R17/arg_ranking/script_output//arg_ranker.sh