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caozhichongchong / arg_ranker

MIT License
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Suspicious error of ARG_table.sum.py #6

Closed susutBu closed 2 years ago

susutBu commented 2 years ago

Hi Anni: Thanks for your greate tool. I can't find the data files stored in the example folder. So I tested it using my data, but there is something error when calling ARG_table.sum.py, and maybe caused by the incorrect file name in line 32 of ARG_table.sum.py. I fixed it and it worked. details: I changed "for lines in open(args.d.replace('.structure.txt','.db.fasta.length'),'r'):" by "for lines in open(args.d.replace('.structure.txt','.db.fasta.length.txt'),'r'):" So, FYI.

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caozhichongchong commented 2 years ago

Hi,

Sorry about that and thank you for letting me know! This issue was reported and resolved with a new pip version uploaded.

Best regards, Anni

caozhichongchong commented 2 years ago

Hi,

I have noticed an error of arg_ranker.v2 when reporting the total ARG abundance in metagenomes. If the total ARG abundance is used in your research, please refer to https://github.com/caozhichongchong/arg_ranker for more details! I'm really sorry about this inconvenience! Please feel free to reach out to me if you have any questions.

Best regards, Anni