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caozhichongchong / arg_ranker

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ValueError: not enough values to unpack (expected 3, got 2) #7

Closed yenjh3910 closed 2 years ago

yenjh3910 commented 2 years ago

I ran arg_ranker pipeline, and got error in "ARG_table.sum.py" step. This is the command I used: arg_ranker -i arg_ranker_test -kkdb ~/kraken_db -t 16 -o arg_ranker_output sh /home/yen/arg_ranker_output/script_output//arg_ranker.sh

Reported 6171 pairwise alignments, 6171 HSPs. 6171 queries aligned. Loading database information... done. 37443608 sequences (5648.90 Mbp) processed in 2652.129s (847.1 Kseq/m, 127.80 Mbp/m). 13759224 sequences classified (36.75%) 23684384 sequences unclassified (63.25%) Traceback (most recent call last): File "/home/yen/miniconda3/lib/python3.8/site-packages/arg_ranker/bin/ARG_table.sum.py", line 92, in sum_ARG(allsearchoutput) File "/home/yen/miniconda3/lib/python3.8/site-packages/arg_ranker/bin/ARG_table.sum.py", line 40, in sum_ARG ARG_length = load_ARG_length() File "/home/yen/miniconda3/lib/python3.8/site-packages/arg_ranker/bin/ARG_table.sum.py", line 34, in load_ARG_length ARG,ARG2,genelength = lines_set[0:3] ValueError: not enough values to unpack (expected 3, got 2)

How could I fix it, thanks a lot

caozhichongchong commented 2 years ago

Hi,

I have noticed an error of arg_ranker.v2 when reporting the total ARG abundance in metagenomes. If the total ARG abundance is used in your research, please refer to https://github.com/caozhichongchong/arg_ranker for more details! I'm really sorry about this inconvenience! Please feel free to reach out to me if you have any questions.

Best regards, Anni