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caracal-pipeline
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stimela
Stimela 2.0
GNU General Public License v2.0
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Sphe makh patch 1
#299
SpheMakh
closed
6 months ago
0
make Py11 compliant
#298
SpheMakh
closed
6 months ago
3
Add `post-init`-style option for container initialization
#297
JSKenyon
opened
6 months ago
0
Issue 291 & 295
#296
o-smirnov
closed
6 months ago
0
add run.ncpu substitution
#295
o-smirnov
closed
6 months ago
0
it would be nice to have a for-loop recipe output that is a list of per-iteration outputs from a particular step
#294
o-smirnov
opened
6 months ago
2
nested =-formulas not properly evaluated when invoked via {}-substitutions
#293
o-smirnov
opened
6 months ago
0
--containall causes crash error when mounting temporary file system in singularity
#292
cgchoza
opened
6 months ago
1
add options to python flavour to modify the command line
#291
o-smirnov
closed
6 months ago
0
add a "remove_on_error" option to outputs
#290
o-smirnov
opened
7 months ago
2
allow wildcard specifiers in _include sections?
#289
o-smirnov
opened
7 months ago
8
need better error message when module is not found for "_include: (module)file.yml"
#288
o-smirnov
opened
7 months ago
1
substitutions inside a default don't quite work for sub-recipes
#287
o-smirnov
opened
7 months ago
2
stimela doc should document single top-level recipe
#286
o-smirnov
closed
7 months ago
0
fixes #284
#285
o-smirnov
closed
7 months ago
0
when a recipe-level alias specifies a default, this needs to override the cab default or step setting
#284
o-smirnov
closed
7 months ago
1
stimela doc error: omegaconf.errors.ConfigAttributeError: Missing key info
#283
o-smirnov
closed
7 months ago
0
For-loops and step level assignments fail prevalidation
#282
JSKenyon
opened
7 months ago
0
Some tiny fixes and improvements for kube backend + dask clusters.
#281
JSKenyon
closed
7 months ago
0
2.0 ready to go
#278
o-smirnov
closed
7 months ago
0
Fix steps tagged with never being ignored even when selected by other tags.
#277
JSKenyon
closed
7 months ago
12
fixes #275
#276
o-smirnov
closed
7 months ago
8
clickify_parameters should be consistent with policies.repeat, and deal with Tuples correctly
#275
o-smirnov
closed
7 months ago
0
fixes #273. Adds schema flattening to clickify_parameters
#274
o-smirnov
closed
7 months ago
0
need option to skip default option setting in clickify_parameters
#273
o-smirnov
closed
7 months ago
0
Honour always tag even when step selection is in use.
#272
JSKenyon
closed
7 months ago
5
logs from nested recipe steps not propagated to console
#271
o-smirnov
closed
7 months ago
1
breizorro returns error code 255 after 0:00:00
#270
Victoria-Samboco
closed
8 months ago
1
Attempt at making substitutions work inside dicts and lists.
#269
JSKenyon
closed
7 months ago
0
Drop Python3.7 support - heavily deprecated upstream.
#268
JSKenyon
closed
8 months ago
0
Escape messages before emitting.
#267
JSKenyon
closed
7 months ago
5
Add recursive finder for filelike objects
#266
JSKenyon
closed
7 months ago
5
"{{" escapes do not necessarily escape {}-substitutions
#265
o-smirnov
opened
8 months ago
0
assign_based_on assignments to recipe inputs not reflected in summary
#264
o-smirnov
opened
8 months ago
4
Issue 262
#263
o-smirnov
closed
8 months ago
0
res['limits']['cpu'] error in k8s backend when setting cpu requests
#262
o-smirnov
closed
8 months ago
5
replace '-' and '.' with underscores for python callables
#261
landmanbester
closed
8 months ago
0
Underscore substitution for python callables
#260
landmanbester
closed
8 months ago
0
Issue 257 & 258
#259
o-smirnov
closed
8 months ago
0
doubled-up log messages on ilifu
#258
o-smirnov
closed
8 months ago
1
chained symlinks confuse singularity
#257
o-smirnov
closed
8 months ago
0
Big documentation push
#256
o-smirnov
closed
8 months ago
0
format_list should omit length comparison
#255
o-smirnov
closed
8 months ago
0
support executing steps/jobs in parallel?
#253
o-smirnov
closed
9 months ago
0
Issue 251
#252
o-smirnov
closed
9 months ago
0
default backend.select should be "singularity,native"
#251
o-smirnov
closed
9 months ago
0
missing docs
#250
o-smirnov
closed
8 months ago
0
Fixes standalone cab running
#249
o-smirnov
closed
9 months ago
0
fixes breakage from #244
#248
o-smirnov
closed
9 months ago
0
fixes #246
#247
o-smirnov
closed
9 months ago
0
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