2) Be more descriptive with the Steps:
Put a title in them.
Say what are they for: What is "process", "reformat" "make a database" etc.
Say what the command is doing (this can be a mix of the lesson text and comments in the code boxes)
Say how much time the long ones take.
3) Only put the necessary output boxes or make them shorter. And say something about the output (what new files are being made etc.).
4) When opening the Anvio server with the IP address describe what IP address needs to be used, because the one shown may not be the correct one always.
5) Add some figures with the Anvio output and use them for a discussion or a challenge box.
6) Convert the current Exercises in a section describing the extra analysis that can be done with Anvio
7) Check that the objectives and key points are covered in the text
1) Beware of the problem described in https://github.com/paumayell/pangenomics/issues/32 it is in conflict with the fir box called Note.
2) Be more descriptive with the Steps: Put a title in them. Say what are they for: What is "process", "reformat" "make a database" etc. Say what the command is doing (this can be a mix of the lesson text and comments in the code boxes) Say how much time the long ones take.
3) Only put the necessary output boxes or make them shorter. And say something about the output (what new files are being made etc.).
4) When opening the Anvio server with the IP address describe what IP address needs to be used, because the one shown may not be the correct one always.
5) Add some figures with the Anvio output and use them for a discussion or a challenge box.
6) Convert the current Exercises in a section describing the extra analysis that can be done with Anvio
7) Check that the objectives and key points are covered in the text