I've added a figure for the episode where a whole new workflow is constructed. I think it's helpful for learners to see an example DAG for the new script. I/we have used this figure a couple of times now while teaching, so I thought it could go into the episode if you find it helpful.
I also added a small edit in episode 12: if learners perform the challenge where kallisto_quant is changed to take gzipped files, then snakemake will also want to re-run kallisto_quant after running touch on files in the trimmed folder.
Hi Tim,
I've added a figure for the episode where a whole new workflow is constructed. I think it's helpful for learners to see an example DAG for the new script. I/we have used this figure a couple of times now while teaching, so I thought it could go into the episode if you find it helpful.
I also added a small edit in episode 12: if learners perform the challenge where
kallisto_quantis changed to take gzipped files, then snakemake will also want to re-runkallisto_quantafter runningtouchon files in thetrimmedfolder.Cheers, Ezra