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cbergmeir / RSNNS

RSNNS: Neural Networks in R using the Stuttgart Neural Network Simulator (SNNS)
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A question for installing RSNNS #4

Closed lasoncheng closed 9 years ago

lasoncheng commented 9 years ago

Hello cbergmeri, When I installed package RSNNS, error occurs. The error is "make: *\ [RSNNS.so] Error 1 ERROR: compilation failed for package 'RSNNS' ". I find RSNNS is compiled by clang. But I use gcc to compile it. Is this an reason for this question? I am looking forward to your reply. Thanks！！！

cbergmeir commented 9 years ago

Hi,

well, I don't get the error. Normally it should be compiled by gcc. I'd need more details such as operating system and what exactly you are trying to do.

Regards, Christoph

On 11/09/2015 05:57 PM, lasoncheng wrote:

Hello cbergmeri, When I installed package R, error occurs. The error is "make: *\ [RSNNS.so] Error 1 ERROR: compilation failed for package 'RSNNS' ". I find RSNNS is compiled by clang. But I use gcc to compile it. Is this an reason for this question? I am looking forward to your reply. Thanks！！！

— Reply to this email directly or view it on GitHub https://github.com/cbergmeir/RSNNS/issues/4.

lasoncheng commented 9 years ago

Thanks for reply. The detail information is as follows: System info:2.6.32-358.el6.x86_64 #1 SMP Fri Feb 22 00:31:26 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux (centos6.5) I use two ways to install RSNNS.(R CMD INSTALL RSNNS_0.4-7.tar.gz or rpmbuild -ba RSNNS.spec ) logs:

cbergmeir commented 9 years ago

Hi,

Welcome to Discover! -L/usr/lib64/R/lib -lR Loading

required package: discoverR Loading required package: rJava Loading
required package: stringr g++: Welcome: No such file or directory
g++: to: No such file or directory g++: Discover!: No such file or
directory make: *** [RSNNS.so] Error 1 ERROR: compilation failed for
package ‘RSNNS’

This last part is a bit strange, RSNNS doesn't use neither discoveR not rJava nor stringr. It seems to be a problem very specific to your setup. If I run R CMD INSTALL it works just fine. I'm not so sure if I can help with this.

Regards, Christoph

On 11/09/2015 06:14 PM, lasoncheng wrote:

Thanks for reply. The detail information is as follows: System info:2.6.32-358.el6.x86_64 #1 https://github.com/cbergmeir/RSNNS/issues/1 SMP Fri Feb 22 00:31:26 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux (centos6.5) I use two ways to install RSNNS.(R CMD INSTALL RSNNS_0.4-7.tar.gz or rpmbuild -ba RSNNS.spec ) logs:

  • installing to library ‘/usr/lib/discover/discoverR/lib’
  • installing /source/ package ‘RSNNS’ ... * package ‘RSNNS’ successfully unpacked and MD5 sums checked * libs g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c SnnsCLib.cpp -o SnnsCLib.o gcc -std=gnu99 -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c SnnsCLibGenericR_util.c -o SnnsCLibGenericR_util.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c SnnsCLibWrapper.cpp -o SnnsCLibWrapper.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c art_ui.cpp -o art_ui.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c arttr_f.cpp -o arttr_f.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c bn_JordElm.cpp -o bn_JordElm.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c bn_art1.cpp -o bn_art1.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c bn_art2.cpp -o bn_art2.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c bn_artmap.cpp -o bn_artmap.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c bn_assoz.cpp -o bn_assoz.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c bn_kohonen.cpp -o bn_kohonen.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c cc_display.cpp -o cc_display.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c cc_glob.cpp -o cc_glob.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c cc_learn.cpp -o cc_learn.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c cc_modify.cpp -o cc_modify.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c cc_prune.cpp -o cc_prune.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c dlvq_learn.cpp -o dlvq_learn.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c func_tbl.cpp -o func_tbl.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c init_f.cpp -o init_f.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c kernel.cpp -o kernel.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c kr_JordElm.cpp -o kr_JordElm.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c kr_amap.cpp -o kr_amap.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c kr_art.cpp -o kr_art.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c kr_art1.cpp -o kr_art1.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c kr_art2.cpp -o kr_art2.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c kr_funcs.cpp -o kr_funcs.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c kr_inversion.cpp -o kr_inversion.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c kr_io.cpp -o kr_io.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c kr_mem.cpp -o kr_mem.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c kr_newpattern.cpp -o kr_newpattern.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c kr_pat_parse.cpp -o kr_pat_parse.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c kr_pat_scan.cpp -o kr_pat_scan.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c kr_td.cpp -o kr_td.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c kr_ui.cpp -o kr_ui.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c learn_f.cpp -o learn_f.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c matrix.cpp -o matrix.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c prun_f.cpp -o prun_f.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c remap_f.cpp -o remap_f.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c scaled_conj_grad.cpp -o scaled_conj_grad.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c stochastic_learn_f.cpp -o stochastic_learn_f.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c tacoma_learn.cpp -o tacoma_learn.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c tbl_func.cpp -o tbl_func.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c trans_f.cpp -o trans_f.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c u_lrand48.cpp -o u_lrand48.o g++ -I/usr/lib64/R/include -DNDEBUG -DR_USE_C99_IN_CXX -I/usr/local/include -I"/usr/lib64/R/library/Rcpp/include" -fpic -g -O2 -c update_f.cpp -o update_f.o Loading required package: discoverR Loading required package: rJava Loading required package: stringr g++ -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o RSNNS.so SnnsCLib.o SnnsCLibGenericR_util.o SnnsCLibWrapper.o art_ui.o arttr_f.o bn_JordElm.o bn_art1.o bn_art2.o bn_artmap.o bn_assoz.o bn_kohonen.o cc_display.o cc_glob.o cc_learn.o cc_modify.o cc_prune.o dlvq_learn.o func_tbl.o init_f.o kernel.o kr_JordElm.o kr_amap.o kr_art.o kr_art1.o kr_art2.o kr_funcs.o kr_inversion.o kr_io.o kr_mem.o kr_newpattern.o kr_pat_parse.o kr_pat_scan.o kr_td.o kr_ui.o learn_f.o matrix.o prun_f.o remap_f.o scaled_conj_grad.o stochastic_learn_f.o tacoma_learn.o tbl_func.o trans_f.o u_lrand48.o update_f.o Welcome to Discover! -L/usr/lib64/R/lib -lR Loading required package: discoverR Loading required package: rJava Loading required package: stringr g++: Welcome: No such file or directory g++: to: No such file or directory g++: Discover!: No such file or directory make: *\ [RSNNS.so] Error 1 ERROR: compilation failed for package ‘RSNNS’
  • removing ‘/usr/lib/discover/discoverR/lib/RSNNS’

— Reply to this email directly or view it on GitHub https://github.com/cbergmeir/RSNNS/issues/4#issuecomment-154976632.

lasoncheng commented 9 years ago

Thanks for your reminding and help! I solved it. It's my fault because I forget to update my conf file! Thanks for your fast reply again!