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VILOCA
VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data
GNU General Public License v3.0
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[automatic github tests] tests executed in same directories
#40
LaraFuhrmann
opened
3 days ago
1
Unique modus + optinal save pkl
#39
LaraFuhrmann
closed
2 days ago
0
Enable unique modus
#38
LaraFuhrmann
closed
1 week ago
0
Revisions of VILOCA manuscript
#37
LaraFuhrmann
closed
2 months ago
0
Update examples + check if window was already processed.
#36
LaraFuhrmann
closed
5 months ago
0
Fix b2w
#35
LaraFuhrmann
closed
7 months ago
1
check exit code before joining multiprocessing
#34
LaraFuhrmann
closed
6 months ago
1
Update command line parameters (#32)
#33
LaraFuhrmann
closed
11 months ago
0
Update command line parameters
#32
LaraFuhrmann
closed
1 year ago
0
working multiprocessing
#31
LaraFuhrmann
closed
10 months ago
1
rename sampler-->mode
#30
LaraFuhrmann
closed
1 year ago
0
Feat cavi multi start
#29
LaraFuhrmann
closed
1 year ago
0
Feat wp1.2
#28
spaceben
closed
1 year ago
0
Add pooled samples mode
#27
spaceben
closed
1 year ago
0
add win_min_ext to commandline argument
#26
LaraFuhrmann
closed
1 year ago
0
remove warning for hard clipping to improve runtime
#25
LaraFuhrmann
closed
1 year ago
0
fix(b2w): indel at same pos
#24
LaraFuhrmann
closed
1 year ago
0
clean up + update installation instructions
#23
LaraFuhrmann
closed
1 year ago
0
Feat none type qualities
#22
LaraFuhrmann
closed
1 year ago
0
add min_windows_coverage as command line argument
#21
LaraFuhrmann
closed
1 year ago
0
Fixing Python installation path for CMake
#20
DrYak
closed
1 year ago
0
Cmakeification
#19
DrYak
closed
1 year ago
0
Feat wp1.1
#18
spaceben
closed
1 year ago
0
[Fix] handle case where alignment does not contain sequencing quality…
#17
LaraFuhrmann
closed
1 year ago
0
feat(b2w): support hard clipped reads
#16
spaceben
closed
1 year ago
0
feat(b2w): support hard clipped reads
#15
spaceben
closed
1 year ago
0
feat(b2w): support hard clipped reads
#14
spaceben
closed
1 year ago
1
Master copy
#13
LaraFuhrmann
closed
1 year ago
0
TEST: Feature vi aug11 merge to master
#12
LaraFuhrmann
closed
1 year ago
0
Merge master into feature-VI-Aug11-merge-to-master
#11
LaraFuhrmann
closed
1 year ago
1
Feature VI (learn_error_params + use_quality_scores) [status 2022Aug11]
#10
LaraFuhrmann
closed
1 year ago
2
Updating b2w
#9
LaraFuhrmann
closed
1 year ago
2
Extended window mode: Pre-processing
#8
spaceben
closed
1 year ago
1
allow CIGAR encoding with code 7 and 8
#7
LaraFuhrmann
closed
2 years ago
1
add haplotype_id to co-occurring mutations
#6
LaraFuhrmann
closed
2 years ago
0
[WIP] Feat WP1.1
#5
spaceben
closed
2 years ago
0
[CI] Fix tests
#4
spaceben
closed
2 years ago
3
Inference mfa looser convergence
#3
LaraFuhrmann
closed
2 years ago
0
Merge master to feature-new-inference
#2
LaraFuhrmann
closed
2 years ago
0
Switch to poetry
#1
LaraFuhrmann
closed
2 years ago
0